PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC8172_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 465aa    MW: 51999 Da    PI: 4.8527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC8172_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12259300854
                 HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  Er RR + N++f+ L++l+P++     +K++ a+i+ +A++YIk+L
  RrC8172_p2 259 TERERRVHFNDRFSDLKSLIPNP-----TKNDRASIVGEAIDYIKEL 300
                 59*********************.....9****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-13243313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.596251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-8257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-12259312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9259300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-11260305No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEEERESIYE DMSCFDPNIP AQATAESSSG PPPPPPPQTM VAGSTSNSNC SVDVEELPEF  60
HLSPQDCPQP SSTPLQFHIN PLPPPPPPCD NQYQNNDIDL IHQMARDQHQ QQQQANWENG  120
YQDFANMVPN SSTTPDLLSL LHLPRCSLPQ SMLPNSFSDI MSSSSAAAVM YDPLFHLNFP  180
LQTRDHQQRN NSCFLGVEDQ IDQMDANGVG GGGINMMYYE GVSNNNNGGF DSGVLEFSSG  240
GNNHRKGRGG SGKSRTFPTE RERRVHFNDR FSDLKSLIPN PTKNDRASIV GEAIDYIKEL  300
LRTIEDLKML VEKKKFGKFR SKKRARVGGE EEEEDGEQEG DTVVYKPKSE VDQSCFNNNN  360
KALRCSWLKR KSKVTEVDVR IIDDEVTIKV VQKKKINCLL FTTRVLDQLQ LDLHHVAGGQ  420
IGEHYSFLFN TKICEGSCVY ASGIADTVME VVEKQYMEAV PPNGY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516950.0AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBankAK2285920.0AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBankBT0057110.0BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBankBT0086080.0BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633827.10.0PREDICTED: transcription factor bHLH10-like isoform X1
SwissprotQ84TK10.0BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A0D3BT850.0A0A0D3BT85_BRAOL; Uncharacterized protein
STRINGBra018270.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.11e-179bHLH family protein